PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 408072
Common NameSELMODRAFT_408072
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family G2-like
Protein Properties Length: 112aa    MW: 12501 Da    PI: 6.2327
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
408072genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.91.6e-11671011550
  G2-like  15 veaveqLGGsekAtPktilelmkvkgLtlehvkSHL 50 
               +ave+L G ekA+P++ile+m+v++Lt+++v+S L
   408072  67 TKAVEEL-GLEKAIPSRILEIMGVESLTRHNVASRL 101
              68*****.**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-1063101IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-1068101IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MKSYAGESVN GQLTSSNDEV TLDDELESMQ RSASDHTGTV DAAQQEQHMQ RVENCHKKER  60
NLTTKKTKAV EELGLEKAIP SRILEIMGVE SLTRHNVASR LRVQEHHCML V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002967220.13e-77hypothetical protein SELMODRAFT_408072
TrEMBLD8R7394e-77D8R739_SELML; Putative uncharacterized protein
STRINGEFJ318191e-76(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28401529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.11e-12GOLDEN2-like 2
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]